FormatHandling::FormatManager Member List

This is the complete list of members for FormatHandling::FormatManager, including all inherited members.

addState(BaseFormatHandler *newState)	FormatHandling::FormatManager	private
available_states	FormatHandling::FormatManager	private
format	FormatHandling::FormatManager
FormatManager()	FormatHandling::FormatManager
getFileFormatName(const std::string &inFile)	FormatHandling::FormatManager
getFormatFromFile(const std::string &filename)	FormatHandling::FormatManager
getFormatFromToken(const std::string &token)	FormatHandling::FormatManager
getInputFormatsAvailable()	FormatHandling::FormatManager
getNonEmptyFile(const std::string &filename)	FormatHandling::FormatManager
getOutputFormatsAvailable()	FormatHandling::FormatManager
hasOutputFile	FormatHandling::FormatManager
info	FormatHandling::FormatManager
keepHeader	FormatHandling::FormatManager
loadAlignment(const std::string &inFile)	FormatHandling::FormatManager
loadAndSaveMultipleAlignments(const std::vector< std::string > &inFiles, const std::string &outPattern, const std::vector< std::string > &outFormats)	FormatHandling::FormatManager
openmode	FormatHandling::FormatManager
replaceINtag(const Alignment &alignment, const std::string &outPattern)	FormatHandling::FormatManager
reverse	FormatHandling::FormatManager
saveAlignment(const std::string &outPattern, const std::vector< std::string > &outFormats, Alignment &alignment)	FormatHandling::FormatManager
saveAlignments(const std::string &outPattern, const std::vector< std::string > &outFormats, const std::vector< Alignment *> &alignmentVector)	FormatHandling::FormatManager
splitAlignmentKeeping(const Alignment &alignment)	FormatHandling::FormatManager
type	FormatHandling::FormatManager
~FormatManager()	FormatHandling::FormatManager