statistics::Similarity Member List

This is the complete list of members for statistics::Similarity, including all inherited members.

aligstatistics::Similarity
applyWindow(int halfW)statistics::Similarity
calcCutPoint(float baseLine, float conservationPct)statistics::Similarity
calculateMatrixIdentity()statistics::Similarity
calculateVectors(bool cutByGap=true)statistics::Similarity
getMdkWindowedVector()statistics::Similarity
halfWindowstatistics::Similarity
isDefinedWindow()statistics::Similarity
isSimMatrixDef()statistics::Similarity
matrixIdentitystatistics::Similarity
MDKstatistics::Similarity
MDK_Windowstatistics::Similarity
printConservationAcl()statistics::Similarity
printConservationColumns()statistics::Similarity
refCounterstatistics::Similarity
setSimilarityMatrix(similarityMatrix *sm)statistics::Similarity
Similarity(Alignment *parentAlignment, Similarity *mold)statistics::Similarity
Similarity(Alignment *parentAlignment)statistics::Similarityexplicit
simMatrixstatistics::Similarity
~Similarity()statistics::Similarity