trimalManager.cpp File Reference

#include <trimalManager.h>
#include "FormatHandling/BaseFormatHandler.h"
#include "Statistics/similarityMatrix.h"
#include "Statistics/Consistency.h"
#include "Statistics/Similarity.h"
#include "InternalBenchmarker.h"
#include "Alignment/Alignment.h"
#include "Statistics/Manager.h"
#include "reportsystem.h"
#include "VCFHandler.h"
#include "Cleaner.h"
#include "defines.h"
#include "values.h"
#include "utils.h"
#include "RawText/menu.txt"
#include "RawText/examples.txt"

Go to the source code of this file.

Macros
#define	checkArgument(argument)
#define	LegacyFormatArgumentWrapper(arg, format)
#define	stat_check(stat)

Macro Definition Documentation

checkArgument

#define checkArgument

(

argument

)

Value:

{ \
    auto x = argument(&argc, argv, &i); \
    if (x == Recognized) continue; \
    if (x == Errored) return x;\
    if (x == Final) return x;\
}

Definition at line 67 of file trimalManager.cpp.

LegacyFormatArgumentWrapper

#define LegacyFormatArgumentWrapper	(		arg,
			format
	)

Value:

if (!strcmp(argv[*i], arg)) { \
        oformats.emplace_back(format); \
        return Recognized; \
    }

Definition at line 389 of file trimalManager.cpp.

stat_check

#define stat_check

(

stat

)

Value:

if (!strcmp(argv[*i], "-" #stat )) { \
        if (!stat) { \
            stat = true; \
            stats--; \
            return Recognized; \
        } else return NotRecognized; \
    }

Definition at line 896 of file trimalManager.cpp.